The white smoke could have been fuel that was not burned, if the spark was cut off. Have you tried by-bassing the kill switch? You may also want to check the connections to the key switch. Then you are down to checking all the electrical connections. If you get to this point, you may want to start by looking at the wires that could have been disturbed by the mod. Also you may want to check the ECU connections and wiring to ensure the wires are not shorting through the insulation to the frame. In general, it seems like you are dealing with a loose electical connection from the power source to the ECU. Oh, you may want to electrically check the fuses to insure they are not intermittant.